Stanford MicroArray Database

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The host response to adenovirus, helper-dependent adenovirus, and adeno-associated virus in mouse liver. The host response to adenovirus, helper-dependent adenovirus, and adeno-associated virus in mouse liver. McCaffrey AP, et al. (2008) Mol Ther 16(5):931-41
Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. Hendrickson DG, et al. (2008) PLoS ONE 3(5):e2126
Module map of stem cell genes guides creation of epithelial cancer stem cells. Module map of stem cell genes guides creation of epithelial cancer stem cells. Wong DJ, et al. (2008) Cell Stem Cell 2(4):333-44
Genomic response of the nematode Caenorhabditis elegans to spaceflight. Genomic response of the nematode Caenorhabditis elegans to spaceflight. Selch F, et al. (2008) Adv Space Res 41(5):807-815
MicroRNA expression signature of human sarcomas. MicroRNA expression signature of human sarcomas. Subramanian S, et al. (2008) Oncogene 27(14):2015-26
Systematic functional characterization of cis-regulatory motifs in human core promoters. Systematic functional characterization of cis-regulatory motifs in human core promoters. Sinha S, et al. (2008) Genome Res 18(3):477-88
A dermal HOX transcriptional program regulates site-specific epidermal fate. A dermal HOX transcriptional program regulates site-specific epidermal fate. Rinn JL, et al. (2008) Genes Dev 22(3):303-7
CSN5 isopeptidase activity links COP9 signalosome activation to breast cancer progression. CSN5 isopeptidase activity links COP9 signalosome activation to breast cancer progression. Adler AS, et al. (2008) Cancer Res 68(2):506-15

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Dozens of new data analysis tools are available from GenePattern. Registered users click on the 'GP' icon in their repository.
SMD Release 2.03
  • Expression Connection: from a publication data set the user is allowed to view and manipulate the cluster and the expression correlations. Currently only available for Tuberculosis and Streptomyces.
  • Better, more timely annotations for some organisms
  • Analysis tools from GenePattern available through registered users' repositories.
    • SMD Access: Access to non-public data is limited to registered Stanford researchers and their collaborators. Please see SMD Registration for more specific information. If you have further questions regarding access, please e-mail the Stanford Microarray Database curators at array@genome.stanford.edu.
    Proprietary Data: Please note that some data in the database are proprietary and subject to legal restriction on their use, re-use and distribution. This includes but is not limited to Affymetrix and Agilent oligonucleotide sequences and patented sequences. It is the responsibility of the person viewing or downloading such data to ensure that such use does not infringe on the intellectual property rights of others.
    Project Funding: The National Cancer Institute at the US National Institutes of Health, the Howard Hughes Medical Institute, and the School of Medicine, Stanford University fund the Microarray Database. The database is a joint project in the Departments of Biochemistry and Genetics at the School of Medicine, Stanford University.
    Database Copyright © 2001-2008 The Board of Trustees of Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.
    Please send comments or questions to: array@genome.stanford.edu