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A Microarray Database Introduction
- Database Accounts and Access
- Registration
- Navigating SMD web-site
- Working with files in UNIX
- Data File Formats
- Scheduled Downtime
- Office Hours
- Help with Publication
- Table Specifications
Entering Data
Organizing Your Data
- Creating and Using Arraylists and Result Set Lists
- Creating and Using Experiment Sets
- Creating and Using Genelists
- Entering and Using Protocols
- Annotating Experiments
- Entering Procedural Annotation
Searches
- Using the Basic Search
- Using the Advanced Results Search
- Search Using Gene Names
- Expression Connection
- Gene Expression Scope
Data Retrieval and Analysis
- Data Selection for Analysis
- Data Analysis and Clustering
- The Repository
- Data Analysis Using SVD
- GO::TermFinder
- Compare Two Experiments
- Data Analysis Methods
- Data File Formats
- Job Queue and the Job Manager
- Q-score calculation
- MEEBO/HEEBO quality plots
- Synthetic Genes
- SMD Tools
- SMD Web Services
- Ontology Web Services
Tutorials:
- Data Analysis Tutorial
- An Introduction to the Database
- Repository tools
- Publishing data from SMD
- Using H/Meebo arrays in SMD